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The following DNA sequence occurs in the nontemplate strand of a structural gene in a bacterium (the promoter sequence is located to the left but is not shown): \(l\) \(5^{\prime}-\) GAATGTCAGAACTGCCATGCTTCATATGAATAGACCTCTAG-3" (a) What is the ribonucleotide sequence of the mRNA molecule that is transcribed from this piece of DNA? (b) What is the amino acid sequence of the polypeptide encoded by this mRNA? (c) If the nucleotide indicated by the arrow undergoes a mutation that changes \(T\) to \(A\), what will be the resulting amino acid sequence following transcription and translation?

Short Answer

Expert verified
a. GAAUGUCAGAACUGCCAUGCUUCAUAUGAAUAGACCUCUAG. b. Met-Leu-Arg-Thr-Ala-Ser-Leu-Ile. c. Methionine (Met).

Step by step solution

01

Understand Transcription Direction

The sequence provided is the nontemplate strand (sense strand) of DNA. The mRNA is synthesized by using the template strand, which is complementary to the nontemplate strand. The mRNA sequence will therefore be identical to the nontemplate strand except it will have uracil (U) in place of thymine (T).
02

Find mRNA Sequence

Write the mRNA sequence by converting each DNA base to its complementary RNA base: \( A \rightarrow U \), \( T \rightarrow A \), \( C \rightarrow G \), \( G \rightarrow C \). Since the mRNA is synthesized in the 5' to 3' direction using the template strand, the mRNA sequence here is:\[ 5'\text{-GAAUGUCAGAACUGCCAUGCUUCAUAUGAAUAGACCUCUAG-3'} \]
03

Identify Start Codon

In the mRNA sequence, identify the start codon 'AUG', which indicates the translation start point. It codes for the amino acid Methionine.
04

Translate mRNA to Polypeptide

Using the genetic code, translate each three-nucleotide codon of the mRNA sequence into its corresponding amino acid, starting from 'AUG'. Continue until a stop codon (UAA, UAG, UGA) is reached: - AUG: Methionine (M) - CUC: Leucine (L) - AGA: Arginine (R) - ACU: Threonine (T) - GCC: Alanine (A) - ACG: Serine (S) - CUC: Leucine (L) - AUU: Isoleucine (I) - UAG: Stop The resulting amino acid sequence is: Met-Leu-Arg-Thr-Ala-Ser-Leu-Ile.
05

Mutation Analysis

The mutation indicated changes a T to an A at the specific location in the DNA. Use the table of codons to determine how this change affects the mRNA and subsequently the protein.Original codon sequence: \( UAU \) (Tyrosine) becomes \( UAA \) (Stop)As the mutation introduces a premature stop codon, the amino acid sequence after the mutation will be truncated to only Methionine (Met), which corresponds to the start codon 'AUG'. The sequence becomes: Met.

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Key Concepts

These are the key concepts you need to understand to accurately answer the question.

DNA Nontemplate Strand
When discussing genetic transcription and translation, understanding the DNA nontemplate strand is key. DNA is a double-helix, meaning it has two strands winding around each other. Each strand consists of nucleotides, which pair up with complementary bases on the opposite strand. Now, when you hear about the 'nontemplate strand,' think of this as the side that isn't used as a template during mRNA synthesis. It might seem counterintuitive, but the nontemplate strand, also known as the "sense" strand, has a sequence identical to the resulting mRNA (with uracil replacing thymine).
1. DNA has two strands: template and nontemplate. 2. The nontemplate strand is often called the 'coding' strand. 3. mRNA is synthesized to mirror the nontemplate strand but uses uracil (U) instead of thymine (T). Understanding this helps you know why mRNA has the same sequence as the DNA nontemplate strand after transcription.
mRNA Synthesis
mRNA, or messenger RNA, is crucial in conveying genetic information from DNA to the ribosomes, where proteins are made. During transcription, an enzyme called RNA polymerase reads the template DNA strand and synthesizes an mRNA strand. For each nucleotide on the template DNA, RNA polymerase adds the complementary RNA nucleotide. Let's break down the process: - **Directionality**: mRNA is synthesized in the 5' to 3' direction. - **Base Pairing**: Unlike DNA replication, RNA uses uracil (U) in place of thymine (T) when pairing nucleotides. - **Identical to the Nontemplate Strand**: The newly synthesized mRNA will have a sequence that matches the nontemplate DNA strand but with U instead of T. By understanding the base pairing rules and synthesis direction, you can predict the mRNA sequence from a known DNA sequence.
Amino Acid Sequencing
Amino acid sequencing is the final step in decoding genetic information, where mRNA is translated into a polypeptide chain, eventually folding to form a functional protein. This process occurs at ribosomes and involves translating nucleotide sequences into amino acid sequences using the genetic code. In translation, mRNA is read in sets of three nucleotides called codons. Each codon specifies an amino acid or a stop signal. Here is how it works: - **Start Codon**: Translation begins at the start codon AUG, which codes for Methionine. - **Genetic Code Interpretation**: The ribosome reads each codon using tRNA molecules which bring the corresponding amino acids. - **Peptide Chain Formation**: Amino acids are linked together to form a polypeptide chain until the ribosome hits a stop codon. A practical application of this is in mutation analysis, where a single base change can significantly impact the resulting protein. For instance, altering a codon to a stop codon can prematurely end translation, resulting in truncated proteins. Knowing this helps us understand how genetic mutations affect protein synthesis and potentially lead to diseases.

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Most popular questions from this chapter

Assume that in the year \(2025,\) the first expedition of humans to Mars discovers several Martian life forms thriving in hydrothermal vents that exist below the planet's surface. Several teams of molecular biologists extract proteins and nucleic acids from these organisms and make some momentous discoveries. Their first discovery is that the proteins in Martian life forms contain only 14 different amino acids instead of the 20 present in life forms on Earth. Their second discovery is that the DNA and RNA in these organisms have only two different nucleotides instead of the four nucleotides present in living organisms on Earth. (a) Assuming that transcription and translation work similarly in Martians and Earthlings, what is the minimum number of nucleotides that must be present in the Martian codon to specify all the amino acids in Martians? (b) Assuming that the Martian code proposed above has translational start-and- stop signals, would you expect the Martian genetic code to be degenerate like the genetic code used on Earth?

(a) What is the difference between a nonsense mutation and a missense mutation? (b) Are nonsense or missense mutations more frequent in living organisms? (c) Why?

(a) In what ways are ribosomes and spliceosomes similar? (b) In what ways are they different?

Alan Garen extensively studied a particular nonsense (chain-termination) mutation in the alkaline phosphatase gene of \(E\) coli. This mutation resulted in the termination of the alkaline phosphatase polypeptide chain at a position where the amino acid tryptophan occurred in the wild-type polypeptide. Garen induced revertants (in this case, mutations altering the same codon) of this mutant with chemical mutagens that induced single base-pair substitutions and sequenced the polypeptides in the revertants. Seven different types of revertants were found, each with a different amino acid at the tryptophan position of the wild-type polypeptide (termination position of the mutant polypeptide fragment). The amino acids present at this position in the various revertants included tryptophan, serine, tyrosine, leucine, glutamic acid, glutamine, and lysine. Did the nonsense mutation studied by Garen contain a UAG, a UAA, or a UGA nonsense mutation? Explain the basis of your deduction.

At what locations in the cell does protein synthesis occur?

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