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Enzymes are often described as following the two-step mechanism: $$ \begin{array}{l} \mathrm{E}+\mathrm{S} \rightleftharpoons \mathrm{ES} \text { (fast) } \\ \mathrm{ES} \longrightarrow \mathrm{E}+\mathrm{P} \text { (slow) } \end{array} $$ where \(\mathrm{E}=\) enzyme, \(\mathrm{S}=\) substrate, \(\mathrm{ES}=\) enzyme- substrate complex, and \(\mathrm{P}=\) product. (a) If an enzyme follows this mechanism, what rate law is expected for the reaction? (b) Molecules that can bind to the active site of an enzyme but are not converted into product are called enzyme inhibitors. Write an additional elementary step to add into the preceding mechanism to account for the reaction of \(\mathrm{E}\) with \(\mathrm{I}\), an inhibitor.

Short Answer

Expert verified
(a) The rate law is \( ext{rate} = k_2 K [E][S] \). (b) The inhibitor adds: \( E + I \rightleftharpoons EI \).

Step by step solution

01

Identify Mechanism and Define Terms

The given enzyme mechanism describes the formation of an enzyme-substrate complex (ES) from an enzyme (E) and a substrate (S), then the conversion of ES into a product (P) and the enzyme (E) is regenerated. This can be represented by: \[ E + S \rightleftharpoons ES \text{ (fast) } \] and \[ ES \rightarrow E + P \text{ (slow) } \]. The states are: \( E \) is enzyme, \( S \) is substrate, \( ES \) is enzyme-substrate complex, and \( P \) is product.
02

Derive the Rate Law

The rate law for a reaction is determined by the slow step because it is the rate-determining step. Here, the slow step is \( ES \rightarrow E + P \). If we let the rate constant be \( k_2 \) for this step, the rate of reaction is given by \( ext{rate} = k_2 [ES] \). Since the fast equilibrium step \( E + S \rightleftharpoons ES \) is involved, we also have: \( K = \frac{[ES]}{[E][S]} \), where \( K \) is the equilibrium constant.
03

Eliminate the Intermediates

Substitute the expression for \([ES]\) in terms of \([E]\) and \([S]\) into the rate equation using the equilibrium expression: \[ [ES] = K [E][S] \]. Thus, the rate becomes: \( ext{rate} = k_2 K [E][S] \). This represents the rate law, which depends on the concentrations of the enzyme \([E]\) and the substrate \([S]\), modified by the effective equilibrium constant \( k_2 K \).
04

Incorporate the Inhibitor

To include an inhibitor, introduce a new reaction step for inhibitor binding: \[ E + I \rightleftharpoons EI \], where \( I \) is the inhibitor and \( EI \) is the enzyme-inhibitor complex. This reaction shows that \( E \) can also bind with \( I \) to form a complex, thereby reducing \( E \) available for reaction with \( S \). The binding can alter the presence of \([E]\) in the equilibrium and subsequently the rate law.

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Key Concepts

These are the key concepts you need to understand to accurately answer the question.

Enzyme-Substrate Complex
In enzyme kinetics, the formation of the enzyme-substrate (ES) complex is a fundamental step. This complex is essential because it is the intermediate that eventually leads to the product formation. Enzymes are highly specific proteins that act as biological catalysts, meaning they can speed up reactions without being consumed in the process.

The ES complex forms when an enzyme (E) binds to its substrate (S), the molecule undergoing reaction, creating the intermediate ES state. This binding is usually rapid, especially when compared to the conversion of the ES complex into product (P). In our exercise, the reaction \[ E + S \rightleftharpoons ES \text{ (fast) } \] shows this initial and reversible binding of the enzyme with its substrate. This fast equilibrium is crucial as it allows the system to establish the maximum enzyme-substrate saturation, which governs how quickly the subsequent steps can proceed.

Understanding this process is important because the rate at which an enzyme converts the substrate into product can affect many biological processes, from digestion to DNA replication.
Rate Law
The rate law of a reaction provides valuable insights into how the concentration of reactants influences the reaction rate. For enzyme-mediated reactions, it is often determined by the slow step, which is known as the rate-determining step. In our enzyme mechanism example, \[ ES \rightarrow E + P \text{ (slow) } \] it is the slow conversion of the enzyme-substrate complex into the product that sets the pace for the entire reaction.

The expression for the rate law is typically derived from this slow step, assuming that the reaction proceeds in a steady state where the formation and breakdown of the ES complex happen at a constant rate. For our particular mechanism, the rate law is given by: \[ \text{rate} = k_2 [ES] \]where \( k_2 \) is the rate constant for the second, slower step.

Since the concentration of the ES complex itself depends on the concentrations of enzyme and substrate, via the equilibrium \[ K = \frac{[ES]}{[E][S]} \]we substitute \[ [ES] = K [E][S] \]into the rate law to express it as \[ \text{rate} = k_2 K [E][S] \].This reveals how both the enzyme and substrate directly affect the reaction speed.
Enzyme Inhibitors
Enzyme inhibitors are molecules that decrease the activity of enzymes, often by binding to the enzyme and preventing substrate interaction. Inhibition is a crucial regulatory mechanism in cells, allowing them to control metabolic pathways efficiently. Inhibitors often possess similar structural configurations as the substrate, enabling them to bind to the active site of the enzyme, yet they are not converted to products slightly altering the active site conformation required for substrate processing.

When introducing an inhibitor into the enzyme reaction mechanism, as in our exercise, a new reaction step is added: \[ E + I \rightleftharpoons EI \]where \( I \) is the inhibitor and \( EI \) is the enzyme-inhibitor complex. This new step competes with the substrate for binding the available enzyme, effectively reducing the concentration of available enzyme-substrate complexes.

This binding can alter the effective concentration of active enzymes \([E]\) and consequently modify the overall rate of the reaction. By understanding how inhibitors bind and alter enzyme activity, biochemists can develop drugs that regulate enzyme function efficiently.

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Most popular questions from this chapter

Indicate whether each statement is true or false. (a) If you compare two reactions with similar collision factors, the one with the larger activation energy will be faster. (b) A reaction that has a small rate constant must have a small frequency factor. (c) Increasing the reaction temperature increases the fraction of successful collisions between reactants.

Consider the following reaction: $$ \mathrm{C}_{2} \mathrm{H}_{5} \mathrm{Cl}(a q)+\mathrm{OH}^{-}(a q) \longrightarrow \mathrm{C}_{2} \mathrm{H}_{5} \mathrm{OH}(a q)+\mathrm{Cl}^{-}(a q) $$ The rate law for this reaction is first order in \(\mathrm{C}_{2} \mathrm{H}_{5} \mathrm{Cl}\) and first order in \(\mathrm{OH}^{-}\). When \(\left[\mathrm{C}_{2} \mathrm{H}_{3} \mathrm{Cl}\right]=4.0 \times 10^{-3} \mathrm{M}\) and \(\left[\mathrm{OH}^{-}\right]=2.5 \times 10^{-2} \mathrm{M},\) the reaction rate at 310 \(\mathrm{K}\) is \(5.20 \times 10^{-2} \mathrm{M} / \mathrm{s}\). (a) What is the value of the rate constant? (b) What are the units of the rate constant?

Consider a hypothetical reaction between \(\mathrm{A}, \mathrm{B},\) and \(\mathrm{C}\) that is zero order in \(\mathrm{A}\), second order in \(\mathrm{B}\), and first order in C. (a) Write the rate law for the reaction. (b) How does the rate change when \([\mathrm{A}]\) is tripled and the other reactant concentrations are held constant? (c) How does the rate change when \([\mathrm{B}]\) is doubled and the other reactant concentrations are held constant? (d) How does the rate change when [C] is tripled and the other reactant concentrations are held constant? (e) By what factor does the rate change when the concentrations of all three reactants are doubled? (f) By what factor does the rate change when the concentrations of all three reactants are cut in half?

Consider the gas-phase reaction between nitric oxide and bromine at \(273^{\circ} \mathrm{C}: 2 \mathrm{NO}(g)+\mathrm{Br}_{2}(g) \longrightarrow 2 \mathrm{NOBr}(g)\). The following data for the initial rate of appearance of NOBr were obtained: \begin{tabular}{lccc} \hline Experiment & {\([\mathrm{NO}](M)\)} & {\(\left[\mathrm{Br}_{2}\right](M)\)} & Initial Rate \((M / \mathrm{s})\) \\ \hline 1 & 0.10 & 0.20 & 24 \\ 2 & 0.25 & 0.20 & 150 \\ 3 & 0.10 & 0.50 & 60 \\ 4 & 0.35 & 0.50 & 735 \\ \hline \end{tabular} (a) Determine the rate law, (b) Calculate the average value of the rate constant for the appearance of NOBr from the four data sets. \((\mathbf{c})\) How is the rate of appearance of \(\mathrm{NOBr}\) related to the rate of disappearance of \(\mathrm{Br}_{2} ?\) (d) What is the rate of disappearance of \(\mathrm{Br}_{2}\) when \([\mathrm{NO}]=0.075 \mathrm{M}\) and \(\left[\mathrm{Br}_{2}\right]=0.25 \mathrm{M} ?\)

The temperature dependence of the rate constant for a reaction is tabulated as follows: \begin{tabular}{ll} \hline Temperature \((\mathrm{K})\) & \(k\left(M^{-1} \mathrm{~s}^{-1}\right)\) \\\ \hline 600 & 0.028 \\ 650 & 0.22 \\ 700 & 1.3 \\ 750 & 6.0 \\ 800 & 23 \\ \hline \end{tabular} Calculate \(E_{a}\) and \(A\).

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