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91Ó°ÊÓ

A glycine residue is in position 210 of the tryptophan synthetase enzyme of wild-type \(E\). coli. If the codon specifying glycine is GGA, how many single- base substitutions will result in an amino acid substitution at position \(210 ?\) What are they? How many will result if the wild-type codon is GGU?

Short Answer

Expert verified
Answer: Three single-base substitutions will result in an amino acid substitution at position 210 for both the GGA and GGU codons specifying glycine.

Step by step solution

01

Understand the genetic code

To solve this problem, we need to understand how the genetic code is translated. The genetic code consists of 64 possible codons, which represent 20 amino acids and 3 stop codons. The codon is a group of three nucleotides (bases), and there are four types of nucleotide bases: adenine (A), guanine (G), cytosine (C), and uracil (U) in RNA or thymine (T) in DNA. In this problem, we are given the wild-type codon for glycine as GGA and GGU.
02

Analyzing single-base substitutions for GGA codon

We will look at all the possible single-base substitutions for the GGA codon and determine which ones will result in an amino acid substitution: 1. GAA: Glu (Glutamic acid) 2. GCA: Ala (Alanine) 3. GUA: Val (Valine) 4. GGA: Gly (Glycine) - no change 5. GGG: Gly (Glycine) - no change Out of the 5 possible single-base substitutions, two of them result in glycine, meaning 5 - 2 = 3 single-base substitutions will result in an amino acid substitution when the wild-type codon is GGA.
03

Analyzing single-base substitutions for GGU codon

We will now look at all the possible single-base substitutions for the GGU codon and determine which ones will result in an amino acid substitution: 1. GCU: Ala (Alanine) 2. GAU: Asp (Aspartic acid) 3. GGU: Gly (Glycine) - no change 4. GGG: Gly (Glycine) - no change 5. GUU: Val (Valine) Out of the 5 possible single-base substitutions, two of them result in glycine, so 5 - 2 = 3 single-base substitutions will result in an amino acid substitution when the wild-type codon is GGU.
04

Comparing the results

Upon analyzing the possible single-base substitutions for both GGA and GGU codons, we found that 3 single-base substitutions will result in an amino acid substitution at position 210 for both codons specifying glycine.

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Key Concepts

These are the key concepts you need to understand to accurately answer the question.

Decoding the Genetic Code
The genetic code is a foundational concept in molecular genetics, acting as the biological cipher that translates genetic information from the language of nucleic acids into the language of proteins. Imagine it as a dictionary where each 'word' or codon consists of three nucleotide bases—adenine (A), guanine (G), cytosine (C), and uracil (U) in RNA (or thymine [T] in DNA). There are 64 possible codons, each corresponding to specific amino acids or signaling the end of a protein chain (stop codons).

In our problem, the focus was on glycine specified by codons GGA and GGU. The exercise asked how many single-base changes in those codons would alter the amino acid at position 210 of the tryptophan synthetase enzyme. Through this exercise, students get an engaging demonstration of how single letters in the genetic 'text' can have significant effects on the resulting protein's structure and function.
Understanding Single-Base Substitutions
A single-base substitution is a type of genetic mutation where one base pair is improperly swapped for another. In the context of codons, this means changing one of the three bases, which can sometimes result in encoding a different amino acid—this is termed a 'missense' mutation. To assess the impact, each base in the given codon is systematically substituted with the remaining three nucleotide options, and the resulting codon's new assignment is compared to the original.

Our exercise demonstrated this process step by step, analyzing the specific genotype of an E. coli enzyme. Generally, single-base substitutions could result in no change (silent mutation), a different amino acid (missense mutation), or a stop signal (nonsense mutation) that prematurely terminates protein synthesis. The critical understanding here is that not all substitutions are consequential—a concept central to understanding genetic mutations and their potential impacts on organisms.
Exploring Amino Acid Substitution Consequences
When a single-base substitution alters the encoded amino acid, we term it an amino acid substitution. These can have mild to drastic effects on a protein's form and function. It's like changing one ingredient in a recipe; sometimes, the dish is unaffected, other times, it's inedible. In protein structures, such a substitution could simply alter a non-essential part or could disrupt the active site of an enzyme, as potentially investigated in our glycine residue example.

The solution indicated that out of five possible mutations for each codon, three would change the amino acid at position 210, leading students to comprehend that genetic stability and variability are finely balanced. By actively doing these exercises, students can recognize that the continuity of life hinges on the integrity and flexibility of genetic information—a thrilling revelation that adds depth to the study of biology.

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Most popular questions from this chapter

Describe the role of two forms of RNA editing that lead to changes in the size and sequence of pre-mRNAs. Briefly describe several examples of each form of editing, including their impact on respective protein products.

An early proposal by George Gamow in 1954 regarding the genetic code considered the possibility that DNA served directly as the template for polypeptide synthesis. In eukaryotes, what difficulties would such a system pose? What observations and theoretical considerations argue against such a proposal?

CONCEPT QUESTION Review the Chapter Concepts list on p. \(283 .\) These all center around how genetic information is stored in DNA and transferred to RNA prior to translation into proteins. Write a short essay that summarizes the key properties of the genetic code and the process by which RNA is transcribed on a DNA template.

A short RNA molecule was isolated that demonstrated a hyperchromic shift (see Chapter 10 ), indicating secondary structure. Its sequence was determined to be 5'-AGGCGCCGACUCUACU-3' (a) Propose a two-dimensional model for this molecule. (b) What DNA sequence would give rise to this RNA molecule through transcription? (c) If the molecule were a tRNA fragment containing a CGA anticodon, what would the corresponding codon be? (d) If the molecule were an internal part of a message, what amino acid sequence would result from it following translation? (Refer to the code chart in Figure 13.7 .)

It has been suggested that the present-day triplet genetic code evolved from a doublet code when there were fewer amino acids available for primitive protein synthesis. (a) Can you find any support for the doublet code notion in the existing coding dictionary? (b) The amino acids Ala, Val, Gly, Asp, and Glu are all early members of biosynthetic pathways and are more evolutionarily conserved than other amino acids. They therefore probably represent "early" amino acids. Of what significance is this information in terms of the evolution of the genetic code? Also, which base, of the first two within a coding triplet, would likely have been the more significant in originally specifying these amino acids? (c) As determined by comparisons of ancient and recently evolved proteins, cysteine, tyrosine, and phenylalanine appear to be latearriving amino acids. In addition, they are considered to have been absent in the abiotic Earth. All three of these amino acids have only two codons each, while many others, earlier in origin, have more. Is this mere coincidence, or might there be some underlying explanation?

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