Chapter 13: Problem 20
Write a paragraph describing the abbreviated chemical reactions that summarize RNA polymerase-directed transcription.
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Chapter 13: Problem 20
Write a paragraph describing the abbreviated chemical reactions that summarize RNA polymerase-directed transcription.
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The concept of consensus sequences of DNA was defined in this chapter as sequences that are similar (homologous) in different genes of the same organism or in genes of different organisms. Examples were the Pribnow box and the -35 region in prokaryotes and the TATA-box region in eukaryotes. One study found that among 73 isolates from the virus HIV-Type \(1 \mathrm{C}\) (a major contributor to the AIDS epidemic), a GGGNNNNNCC consensus sequence exists (where \(\mathrm{N}\) equals any nitrogenous base) in the promoter-enhancer region of the \(\mathrm{NF}-\kappa \mathrm{B}\) transcription factor, a cis- acting element that is critical for initiating HIV transcription in human macrophages (Novitsky et al., 2002 ). The authors contend that finding this and other conserved sequences may be of value in designing an AIDS vaccine. What advantages would knowing these consensus sequences confer? Are there disadvantages as a vaccine is designed?
Recent observations indicate that alternative splicing is a common way for eukaryotes to expand their repertoire of gene functions. Studies indicate that approximately 50 percent of human genes exhibit alternative splicing and approximately 15 percent of disease-causing mutations involve aberrant alternative splicing. Different tissues show remarkably different frequencies of alternative splicing, with the brain accounting for approximately 18 percent of such events (Xu et al., 2002 . Nuc. Acids Res. \(30: 3754-3766\) ). (a) Define alternative splicing and speculate on the evolutionary strategy alternative splicing offers to organisms. (b) Why might some tissues engage in more alternative splicing than others?
Describe the role of two forms of RNA editing that lead to changes in the size and sequence of pre-mRNAs. Briefly describe several examples of each form of editing, including their impact on respective protein products.
Predict the amino acid sequence produced during translation by the following short hypothetical mRNA sequences (note that the second sequence was formed from the first by a deletion of only one nucleotide): Sequence 1: 5'-AUGCCGGAUUAUAGUUGA-3' Sequence \(2: 5^{\prime}-\) AUGCCGGAUUAAGUUGA-3' What type of mutation gave rise to Sequence 2 ?
Review the Chapter Concepts list on \(\mathrm{p} .342 .\) These all center around how genetic information is stored in DNA and transferred to RNA prior to translation into proteins. Write a short essay that summarizes the key properties of the genetic code and the process by which \(\mathrm{RNA}\) is transcribed on a DNA template.
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